After looking on your log I think that on your Win 7 64-bit machine you could have an older version of your package. In this case you have an upgrade and your current package installation reads the feature states from the old version and then sets these feature states in the current version. You should try to test your package on a clean machine.
Also, if you want to use the current installation path of your package when you upgrade an older version of your application you must disable the "Product Information -> Upgrades -> Application Versions -> Use original installation path when upgrading" option.
If the problem persists can you please send us the aip file and a verbose log
to support at advancedinstaller dot com
so we can continue investigating them?