So I choose the signtool.exe from the codebase by clicking on the [...] and just browsing to the file.
After that, all I can do is specify the command line arguments.
I need to specify the certificate file in the command line
e.g.
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sign /f "MyCertificate.cer" ... etc.
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sign /f "C:\Certificates\MyCertificate.cer" ... etc.
1. as in the first example above - not specifying the path and having the cert file in the same location as the signing tool hoping that it would run in the local dir.
2. Specify the path to the file in the code base (this is how it's displayed when you browse to the signing tool or the cert file in the built in)
e.g.
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sign /f "C:\code\MyProject\setup\signing\MyCertificate.cer" ... etc.